571 results
Wing shape differences along a migration route of the long-distance migrant Globe Skimmer Dragonfly Pantala flavescens
- Frank Johansson, Tobias Kollberg Hedström, R. Charles Anderson, Prathapan K. Divakaran, Francy K. Kakkassery
-
- Journal:
- Journal of Tropical Ecology / Volume 38 / Issue 1 / January 2022
- Published online by Cambridge University Press:
- 25 November 2021, pp. 17-24
-
- Article
-
- You have access Access
- Open access
- HTML
- Export citation
-
Animals which migrate by flying should be subject to selection for optimal wing characteristics that maximize energy efficiency during migration. We investigated wing shape and wing area variation in the Globe Skimmer Dragonfly Pantala flavescens, which has the longest known migration of any insect. Wing shape and wing area differences between individuals in southern Peninsular India, and migrating individuals at a stop-over site on the Maldives, were compared. Results suggest that individuals which successfully reached the Maldives, on their way from India to Africa, had a broader wing base and an overall more slender wing shape than individuals in southern India. Contrary to our expectations, wing area did not differ significantly in most of our comparisons between southern India and the Maldives, suggesting that wing shape is more important than wing area for successful migration in P. flavescens. The results provide indirect evidence of natural selection on wing shape in a migrating dragonfly.
Major Hospital Fire in Saint Lucia
- Charles Greenidge, Shamir O. Cawich, Richard Burt, Tashina Francis
-
- Journal:
- Prehospital and Disaster Medicine / Volume 36 / Issue 6 / December 2021
- Published online by Cambridge University Press:
- 24 September 2021, pp. 797-802
- Print publication:
- December 2021
-
- Article
- Export citation
-
This paper provides a field report on a hospital fire at the St. Jude hospital in the Eastern Caribbean Island of Saint Lucia. The hospital was completely destroyed by the fire and three deaths were recorded. This paper analyses the emergency response to this hospital fire and discusses the lessons learned from this experience. This is a valuable lesion for developing countries in the Caribbean, especially since there have been four hospital fires reported in the Caribbean within the past decade.
Mental health disorders and utilization of mental healthcare services in United Nations personnel
- Adam D. Brown, Katharina Schultebraucks, Meng Qian, Meng Li, Danny Horesh, Carol Siegel, Yosef Brody, Abdalla Mansour Amer, Rony Kapel Lev-Ari, Francis Mas, Charles R. Marmar, Jillann Farmer
-
- Journal:
- Global Mental Health / Volume 7 / 2020
- Published online by Cambridge University Press:
- 12 February 2020, e5
-
- Article
-
- You have access Access
- Open access
- HTML
- Export citation
-
Background
United Nations (UN) personnel address a diverse range of political, social, and cultural crises throughout the world. Compared with other occupations routinely exposed to traumatic stress, there remains a paucity of research on mental health disorders and access to mental healthcare in this population. To fill this gap, personnel from UN agencies were surveyed for mental health disorders and mental healthcare utilization.
MethodsUN personnel (N = 17 363) from 11 UN entities completed online measures of generalized anxiety disorder (GAD), major depressive disorder (MDD), posttraumatic stress disorder (PTSD), trauma exposure, mental healthcare usage, and socio-demographic information.
ResultsExposure to one or more traumatic events was reported by 36.2% of survey responders. Additionally, 17.9% screened positive for GAD, 22.8% for MDD, and 19.9% for PTSD. Employing multivariable logistic regressions, low job satisfaction, younger age (<35 years of age), greater length of employment, and trauma exposure on or off-duty was significantly associated with all the three disorders. Among individuals screening positive for a mental health disorder, 2.05% sought mental health treatment within and 10.01% outside the UN in the past year.
ConclusionsUN personnel appear to be at high risk for trauma exposure and screening positive for a mental health disorder, yet a small percentage screening positive for mental health disorders sought treatment. Despite the mental health gaps observed in this study, additional research is needed, as these data reflect a large sample of convenience and it cannot be determined if the findings are representative of the UN.
Impact of enucleation on adult retinoblastoma survivors’ quality of life: A qualitative study of survivors' perspectives
- Smita C. Banerjee, Elaine Pottenger, Mary Petriccione, Joanne F. Chou, Jennifer S. Ford, Charles A. Sklar, Leslie L. Robison, Ruth A. Kleinerman, Kevin C. Oeffinger, Jasmine H. Francis, David H. Abramson, Ira J. Dunkel, Danielle Novetsky Friedman
-
- Journal:
- Palliative & Supportive Care / Volume 18 / Issue 3 / June 2020
- Published online by Cambridge University Press:
- 08 November 2019, pp. 322-331
-
- Article
- Export citation
-
Objectives
Retinoblastoma is the most common primary intraocular tumor of childhood with >95% survival rates in the US. Traditional therapy for retinoblastoma often included enucleation (removal of the eye). While much is known about the visual, physical, and cognitive ramifications of enucleation, data are lacking about survivors' perception of how this treatment impacts overall quality of life.
MethodsQualitative analysis of an open-ended response describing how much the removal of an eye had affected retinoblastoma survivors' lives and in what ways in free text, narrative form.
ResultsFour hundred and four retinoblastoma survivors who had undergone enucleation (bilateral disease = 214; 52% female; mean age = 44, SD = 11) completed the survey. Survivors reported physical problems (n = 205, 50.7%), intrapersonal problems (n = 77, 19.1%), social and relational problems (n = 98, 24.3%), and affective problems (n = 34, 8.4%) at a mean of 42 years after diagnosis. Three key themes emerged from survivors' responses; specifically, they (1) continue to report physical and intrapersonal struggles with appearance and related self-consciousness due to appearance; (2) have multiple social and relational problems, with teasing and bullying being prominent problems; and (3) reported utilization of active coping strategies, including developing more acceptance and learning compensatory skills around activities of daily living.
Significance of resultsThis study suggests that adult retinoblastoma survivors treated with enucleation continue to struggle with a unique set of psychosocial problems. Future interventions can be designed to teach survivors more active coping skills (e.g., for appearance-related issues, vision-related issues, and teasing/bullying) to optimize survivors' long-term quality of life.
The North Atlantic Fish Revolution (ca. AD 1500)
- Poul Holm, Francis Ludlow, Cordula Scherer, Charles Travis, Bernard Allaire, Cristina Brito, Patrick W. Hayes, J. Al Matthews, Kieran J. Rankin, Richard J. Breen, Robert Legg, Kevin Lougheed, John Nicholls
-
- Journal:
- Quaternary Research / Volume 108 / July 2022
- Published online by Cambridge University Press:
- 17 April 2019, pp. 92-106
-
- Article
-
- You have access Access
- Open access
- HTML
- Export citation
-
We propose the concept of the “Fish Revolution” to demarcate the dramatic increase in North Atlantic fisheries after AD 1500, which led to a 15-fold increase of cod (Gadus morhua) catch volumes and likely a tripling of fish protein to the European market. We consider three key questions: (1) What were the environmental parameters of the Fish Revolution? (2) What were the globalising effects of the Fish Revolution? (3) What were the consequences of the Fish Revolution for fishing communities? While these questions would have been considered unknowable a decade or two ago, methodological developments in marine environmental history and historical ecology have moved information about both supply and demand into the realm of the discernible. Although much research remains to be done, we conclude that this was a major event in the history of resource extraction from the sea, mediated by forces of climate change and globalisation, and is likely to provide a fruitful agenda for future multidisciplinary research.
49 Combinatorial Pharmacogenomics to Guide Treatment Selection for Major Depressive Disorder: A Large, Blinded, Randomized Controlled Trial
- John F. Greden, Anthony J. Rosthschild, Michael Thase, Boadie W. Dunlop, DMH Charles DeBattista, Charles R. Conway, Brent P. Forester, Francis M. Mondimore, Richard C. Shelton, James Li, Alexa Gilbert, Lindsey Burns, Michael Jablonski, Bryan Dechairo, Sagar Parikh
-
- Journal:
- CNS Spectrums / Volume 24 / Issue 1 / February 2019
- Published online by Cambridge University Press:
- 12 March 2019, pp. 202-203
-
- Article
-
- You have access Access
- Export citation
-
Background
Major depressive disorder (MDD) is a leading cause of disease burden worldwide, with lifetime prevalence in the United States of 17%. Here we present the results of the first prospective, large-scale, patient- and rater-blind, randomized controlled trial evaluating the clinical importance of achieving congruence between combinatorial pharmacogenomic (PGx) testing and medication selection for MDD.
Methods1,167 outpatients diagnosed with MDD and an inadequate response to ≥1 psychotropic medications were enrolled and randomized 1:1 to a Treatment as Usual (TAU) arm or PGx-guided care arm. Combinatorial PGx testing categorized medications in three groups based on the level of gene-drug interactions: use as directed, use with caution, or use with increased caution and more frequent monitoring. Patient assessments were performed at weeks 0 (baseline), 4, 8, 12 and 24. Patients, site raters, and central raters were blinded in both arms until after week 8. In the guided-care arm, physicians had access to the combinatorial PGx test result to guide medication selection. Primary outcomes utilized the Hamilton Depression Rating Scale (HAM-D17) and included symptom improvement (percent change in HAM-D17 from baseline), response (50% decrease in HAM-D17 from baseline), and remission (HAM-D17<7) at the fully blinded week 8 time point. The durability of patient outcomes was assessed at week 24. Medications were considered congruent with PGx test results if they were in the ‘use as directed’ or ‘use with caution’ report categories while medications in the ‘use with increased caution and more frequent monitoring’ were considered incongruent. Patients who started on incongruent medications were analyzed separately according to whether they changed to congruent medications by week8.
ResultsAt week 8, symptom improvement for individuals in the guided-care arm was not significantly different than TAU (27.2% versus 24.4%, p=0.11). However, individuals in the guided-care arm were more likely than those in TAU to achieve remission (15% versus 10%; p<0.01) and response (26% versus 20%; p=0.01). Remission rates, response rates, and symptom reductions continued to improve in the guided-treatment arm until the 24week time point. Congruent prescribing increased to 91% in the guided-care arm by week 8. Among patients who were taking one or more incongruent medication at baseline, those who changed to congruent medications by week 8 demonstrated significantly greater symptom improvement (p<0.01), response (p=0.04), and remission rates (p<0.01) compared to those who persisted on incongruent medications.
ConclusionsCombinatorial PGx testing improves short- and long-term response and remission rates for MDD compared to standard of care. In addition, prescribing congruency with PGx-guided medication recommendations is important for achieving symptom improvement, response, and remission for MDD patients.
Funding Acknowledgements: This study was supported by Assurex Health, Inc.
Participatory Research and Extension Strategies for Sustainable Agricultural Systems
- Jerry D. Doll, Charles A. Francis
-
- Journal:
- Weed Technology / Volume 6 / Issue 2 / June 1992
- Published online by Cambridge University Press:
- 12 June 2017, pp. 473-482
-
- Article
- Export citation
-
Conventional strategies for developing component technologies are being challenged by the complexities of today's agricultural environment. The needs for support of adaptive research, for sufficient field sites to evaluate location specificity of technologies, and for testing components as parts of total farm systems are not easily met within the confines of the experiment station. On-farm research strategies involve the farmer and rancher in project design, field implementation, collection and evaluation of data, and interpretation of results. Farmer presentations in extension meetings and field tours involve these cooperators in the demonstration and technology sharing process. Farmers in Nebraska and Wisconsin have applied this process to research nitrogen levels in continuous and rotated cereals, the use of allelopathic chemicals from rye (Secale cereale L.) to reduce herbicide costs in soybean [Glycine max (L.) Merr.] production, on other alternative weed management strategies, and strip cropping to reduce soil erosion and meet government program compliance requirements. Useful in a wide range of ecological and economic circumstances, participatory methods using farming systems research and extension strategies have global applications.
The Sound-Poetry of the Instability of Reality: The audio reality effect and mimesis
- Charles Francis Underriner IV
-
- Journal:
- Organised Sound / Volume 22 / Issue 1 / April 2017
- Published online by Cambridge University Press:
- 07 March 2017, pp. 20-31
- Print publication:
- April 2017
-
- Article
- Export citation
-
This article proposes the audio reality effect as a meaningful translation of Roland Barthes’s literary reality effect to the sonic realm. This refinement of transcontextuality and source recognition is applied to electroacoustic music and soundscape composition using the works and writings of Emmerson, Truax, Wishart, Smalley, Fischman, Young, Norman and Field. Lastly, this study mimetically analyses 2 seconds / b minor / wave by Michael Pisaro and Taku Sugimoto in order to demonstrate the relevance of mimesis and the audio reality effect for understanding current musical practice.
The Impacts of the Middle Holocene High Sea-Level Stand and Climatic Changes on Mangroves of the Jucuruçu River, Southern Bahia – Northeastern Brazil
- Neuza Araújo Fontes, Caio A. Moraes, Marcelo C L Cohen, Igor Charles C. Alves, Marlon Carlos França, Luiz C R Pessenda, Mariah Izar Francisquini, José Albertino Bendassolli, Kita Macario, Francis Mayle
-
- Journal:
- Radiocarbon / Volume 59 / Issue 1 / February 2017
- Published online by Cambridge University Press:
- 06 February 2017, pp. 215-230
- Print publication:
- February 2017
-
- Article
-
- You have access Access
- HTML
- Export citation
-
The aim of this paper is to evaluate the compatibility between the Holocene relative sea-level (RSL) curves proposed for the Brazilian littoral and mangrove dynamics along a fluvial valley in the state of southern Bahia. This was done integrating geomorphological, sedimentological, palynological, and stable isotopic data from two cores collected at the mouth of the Jucuruçu River and at a site 23 km inland, near the city of Prado, northeastern Brazil. Core PR07, sampled from a fluvial plain at about 4.5±1 m above the RSL, reveals mangrove pollen (5–20%) and estuarine/terrestrial organic matter (δ13C=~–25‰, C/N=7.3–67) between 4.5 m (~7400 cal yr BP) and 1.75 m depth (~5350 cal yr BP). Core PR11, sampled from a mangrove tidal flat, also revealed mangrove pollen taxa (5-28%) since 660 cal yr BP. Core PR07 indicated absence of mangrove pollen and increase of sedimentary organic matter sourced from terrestrial C3 plants (δ13C=~–27‰, C/N=22–159) during the last 5350 cal yr BP. Probably, the changes in vegetation and sedimentary organic matter identified in core PR07 were caused by the combined effects of the RSL fluctuations, with a highstand at about 5350 cal yr BP of 2.7±1.35 m, and changes in fluvial discharge.
Mechanical Termination of Diverse Cover Crop Mixtures for Improved Weed Suppression in Organic Cropping Systems
- Sam E. Wortman, Charles A. Francis, Mark A. Bernards, Erin E. Blankenship, John L. Lindquist
-
- Journal:
- Weed Science / Volume 61 / Issue 1 / March 2013
- Published online by Cambridge University Press:
- 20 January 2017, pp. 162-170
-
- Article
- Export citation
-
Cover crops can provide many benefits in agroecosystems, including the opportunity for improved weed control. However, the weed suppressive potential of cover crops may depend on the species (or mixture of species) chosen, and the method of cover crop termination and residue management. The objective of this study was to determine the effects of cover crop mixture and mechanical termination method on weed biomass and density, and relative crop yield in an organic cropping system. A field experiment was conducted from 2009 to 2011 near Mead, NE, where spring-sown mixtures of two, four, six, and eight cover crop species were included in a sunflower–soybean–corn crop rotation. Cover crops were planted in late March, terminated in late May using a field disk or sweep plow undercutter, and main crops were planted within 1 wk of termination. Terminating cover crops with the undercutter consistently reduced early-season grass weed biomass, whereas termination with the field disk typically stimulated grass weed biomass relative to a no cover crop control (NC). The effects of cover crop mixture were not evident in 2009, but the combination of the undercutter and the eight-species mixture reduced early-season weed biomass by 48% relative to the NC treatment in 2010. Cover crops provided less weed control in 2011, where only the combination of the undercutter and the two-species mixture reduced weed biomass (by 31%) relative to the NC treatment. Termination with the undercutter resulted in relative yield increases of 16.6 and 22.7% in corn and soybean, respectively. In contrast, termination with the field disk resulted in a relative yield reduction of 13.6% in soybean. The dominant influence of termination method highlights the importance of appropriate cover crop residue management in maximizing potential agronomic benefits associated with cover crops.
The role of physical variables in biodiversity patterns of intertidal macroalgae along European coasts
- Araceli Puente, Xabier Guinda, Jose A. Juanes, Elvira Ramos, Beatriz Echavarri-Erasun, Camino F. De La Hoz, Steven Degraer, Francis Kerckhof, Natalia Bojanić, Maria Rousou, Helen Orav-Kotta, Jonne Kotta, Jérôme Jourde, Maria Luiza Pedrotti, Jean-Charles Leclerc, Nathalie Simon, Guy Bachelet, Nicolas Lavesque, Christos Arvanitidis, Christina Pavloudi, Sarah Faulwetter, Tasman P. Crowe, Jennifer Coughlan, Lisandro Benedetti Cecchi, Martina Dal Bello, Paolo Magni, Serena Como, Stefania Coppa, Giuseppe Andrea De Lucia, Tomas Rugins, Emilia Jankowska, Jan Marcin Weslawski, Jan Warzocha, Teresa Silva, Pedro Ribeiro, Valentina De Matos, Isabel Sousa-Pinto, Jesús Troncoso, Ohad Peleg, Gil Rilov, Free Espinosa, Angel Pérez Ruzafa, Matt Frost, Herman Hummel, Pim Van Avesaath
-
- Journal:
- Journal of the Marine Biological Association of the United Kingdom / Volume 97 / Issue 3 / May 2017
- Published online by Cambridge University Press:
- 15 December 2016, pp. 549-560
-
- Article
- Export citation
-
In the frame of the COST ACTION ‘EMBOS’ (Development and implementation of a pan-European Marine Biodiversity Observatory System), coverage of intertidal macroalgae was estimated at a range of marine stations along the European coastline (Subarctic, Baltic, Atlantic, Mediterranean). Based on these data, we tested whether patterns in macroalgal diversity and distribution along European intertidal rocky shores could be explained by a set of meteo-oceanographic variables. The variables considered were salinity, sea surface temperature, photosynthetically active radiation, significant wave height and tidal range and were compiled from three different sources: remote sensing, reanalysis technique and in situ measurement. These variables were parameterized to represent average conditions (mean values), variability (standard deviation) and extreme events (minimum and maximum values). The results obtained in this study contribute to reinforce the EMBOS network approach and highlight the necessity of considering meteo-oceanographic variables in long-term assessments. The broad spatial distribution of pilot sites has allowed identification of latitudinal and longitudinal gradients manifested through species composition, diversity and dominance structure of intertidal macroalgae. These patterns follow a latitudinal gradient mainly explained by sea surface temperature, but also by photosynthetically active radiation, salinity and tidal range. Additionally, a longitudinal gradient was also detected and could be linked to wave height.
Clover green manure productivity and weed suppression in an organic grain rotation
- Katja Koehler-Cole, James R. Brandle, Charles A. Francis, Charles A. Shapiro, Erin E. Blankenship, P. Stephen Baenziger
-
- Journal:
- Renewable Agriculture and Food Systems / Volume 32 / Issue 5 / October 2017
- Published online by Cambridge University Press:
- 05 December 2016, pp. 474-483
-
- Article
- Export citation
-
Green manure crops must produce high biomass to supply biological N, increase organic matter and control weeds. The objectives of our study were to assess above-ground biomass productivity and weed suppression of clover (Trifolium spp.) green manures in an organic soybean [Glycine max (L.) Merr.]-winter wheat (Triticum aestivum L.)-corn (Zea mays L.) rotation in eastern Nebraska in three cycles (2011–12, 2012–13, 2013–14). Treatments were green manure species [red clover (T. pratense L.) and white clover (T. repens L.)] undersown into winter wheat in March and green manure mowing regime (one late summer mowing or no mowing). We measured wheat productivity and grain protein at wheat harvest, and clover and weed above-ground biomass as dry matter (DM) at wheat harvest, 35 days after wheat harvest, in October and in April before clover termination. Winter wheat grain yields and grain protein were not affected by undersown clovers. DM was higher for red than for white clover at most sampling times. Red clover produced between 0.4 and 5.5 Mg ha−1 in the fall and 0.4–5.2 Mg ha−1 in the spring. White clover produced between 0.1 and 2.5 Mg ha−1 in the fall and 0.2–3.1 Mg ha−1 in the spring. Weed DM was lower under red clover than under white clover at most sampling times. In the spring, weed DM ranged from 0.0 to 0.6 Mg ha−1 under red clover and from 0.0 to 3.1 Mg ha−1 under white clover. Mowing did not consistently affect clover or weed DM. For organic growers in eastern Nebraska, red clover undersown into winter wheat can be a productive green manure with good weed suppression potential.
Consistent patterns of spatial variability between NE Atlantic and Mediterranean rocky shores
- Martina Dal Bello, Jean-Charles Leclerc, Lisandro Benedetti-Cecchi, Giuseppe Andrea De Lucia, Christos Arvanitidis, Pim Van Avesaath, Guy Bachelet, Natalia Bojanic, Serena Como, Stefania Coppa, Jennifer Coughlan, Tasman Crowe, Steven Degraer, Free Espinosa, Sarah Faulwetter, Matt Frost, Xabier Guinda, Emilia Jankowska, Jérôme Jourde, Jose Antonio Juanes De La Pena, Francis Kerckhof, Jonne Kotta, Nicolas Lavesque, Paolo Magni, Valentina De Matos, Helen Orav-Kotta, Christina Pavloudi, Maria Luiza Pedrotti, Ohad Peleg, Angel Pérez-Ruzafa, Araceli Puente, Pedro Ribeiro, Fabienne Rigaut-Jalabert, Gil Rilov, Maria Rousou, Marcos Rubal, Tomas Ruginis, Teresa Silva, Nathalie Simon, Isabel Sousa-Pinto, Jesús Troncoso, Jan Warzocha, Jan Marcin Weslawski, Herman Hummel
-
- Journal:
- Journal of the Marine Biological Association of the United Kingdom / Volume 97 / Issue 3 / May 2017
- Published online by Cambridge University Press:
- 11 November 2016, pp. 539-547
-
- Article
- Export citation
-
Examining how variability in population abundance and distribution is allotted among different spatial scales can inform of processes that are likely to generate that variability. Results of studies dealing with scale issues in marine benthic communities suggest that variability is concentrated at small spatial scales (from tens of centimetres to few metres) and that spatial patterns of variation are consistent across ecosystems characterized by contrasting physical and biotic conditions, but this has not been formally tested. Here we quantified the variability in the distribution of intertidal rocky shore communities at a range of spatial scales, from tens of centimetres to thousands of kilometres, both in the NE Atlantic and the Mediterranean, and tested whether the observed patterns differed between the two basins. We focused on canopy-forming macroalgae and associated understorey assemblages in the low intertidal, and on the distribution of Patella limpets at mid intertidal levels. Our results highlight that patterns of spatial variation, at each scale investigated, were consistent between the Atlantic and the Mediterranean, suggesting that similar ecological processes operate in these regions. In contrast with former studies, variability in canopy cover, species richness and limpet abundance was equally distributed among spatial scales, possibly reflecting the fingerprint of multiple processes. Variability in community structure of low intertidal assemblages, instead, peaked at the largest scale, suggesting that oceanographic processes and climatic gradients may be important. We conclude that formal comparisons of variability across scales nested in contrasting systems are needed, before any generalization on patterns and processes can be made.
Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study
- Jonne Kotta, Helen Orav-Kotta, Holger Jänes, Herman Hummel, Christos Arvanitidis, Pim Van Avesaath, Guy Bachelet, Lisandro Benedetti-Cecchi, Natalia Bojanić, Serena Como, Stefania Coppa, Jennifer Coughlan, Tasman Crowe, Martina Dal Bello, Steven Degraer, Jose Antonio Juanes De La Pena, Valentina Kirienko Fernandes De Matos, Free Espinosa, Sarah Faulwetter, Matt Frost, Xabier Guinda, Emilia Jankowska, Jérôme Jourde, Francis Kerckhof, Nicolas Lavesque, Jean-Charles Leclerc, Paolo Magni, Christina Pavloudi, Maria Luiza Pedrotti, Ohad Peleg, Angel Pérez-Ruzafa, Araceli Puente, Pedro Ribeiro, Gil Rilov, Maria Rousou, Tomas Ruginis, Teresa Silva, Nathalie Simon, Isabel Sousa-Pinto, Jesús Troncoso, Jan Warzocha, Jan Marcin Weslawski
-
- Journal:
- Journal of the Marine Biological Association of the United Kingdom / Volume 97 / Issue 3 / May 2017
- Published online by Cambridge University Press:
- 04 October 2016, pp. 525-538
-
- Article
- Export citation
-
Coastal ecosystems are highly complex and driven by multiple environmental factors. To date we lack scientific evidence for the relative contribution of natural and anthropogenic drivers for the majority of marine habitats in order to adequately assess the role of different stressors across the European seas. Such relationship can be investigated by analysing the correlation between environmental variables and biotic patterns in multivariate space and taking into account non-linearities. Within the framework of the EMBOS (European Marine Biodiversity Observatory System) programme, hard bottom intertidal communities were sampled in a standardized way across European seas. Links between key natural and anthropogenic drivers and hard bottom communities were analysed using Boosted Regression Trees modelling. The study identified strong interregional variability and showed that patterns of hard bottom macroalgal and invertebrate communities were primarily a function of tidal regime, nutrient loading and water temperature (anomalies). The strength and shape of functional form relationships varied widely however among types of organisms (understorey algae composing mostly filamentous species, canopy-forming algae or sessile invertebrates) and aggregated community variables (cover or richness). Tidal regime significantly modulated the effect of nutrient load on the cover and richness of understorey algae and sessile invertebrates. In contrast, hydroclimate was more important for canopy algae and temperature anomalies and hydroclimate separately or interactively contributed to the observed patterns. The analyses also suggested that climate-induced shifts in weather patterns may result in the loss of algal richness and thereby in the loss of functional diversity in European hard bottom intertidal areas.
Geographic patterns of biodiversity in European coastal marine benthos
- Herman Hummel, Pim Van Avesaath, Sander Wijnhoven, Loran Kleine-Schaars, Steven Degraer, Francis Kerckhof, Natalia Bojanic, Sanda Skejic, Olja Vidjak, Maria Rousou, Helen Orav-Kotta, Jonne Kotta, Jérôme Jourde, Maria Luiza Pedrotti, Jean-Charles Leclerc, Nathalie Simon, Fabienne Rigaut-Jalabert, Guy Bachelet, Nicolas Lavesque, Christos Arvanitidis, Christina Pavloudi, Sarah Faulwetter, Tasman Crowe, Jennifer Coughlan, Lisandro Benedetti-Cecchi, Martina Dal Bello, Paolo Magni, Serena Como, Stefania Coppa, Anda Ikauniece, Tomas Ruginis, Emilia Jankowska, Jan Marcin Weslawski, Jan Warzocha, Sławomira Gromisz, Bartosz Witalis, Teresa Silva, Pedro Ribeiro, Valentina Kirienko Fernandes De Matos, Isabel Sousa-Pinto, Puri Veiga, Jesús Troncoso, Xabier Guinda, Jose Antonio Juanes De La Pena, Araceli Puente, Free Espinosa, Angel Pérez-Ruzafa, Matt Frost, Caroline Louise Mcneill, Ohad Peleg, Gil Rilov
-
- Journal:
- Journal of the Marine Biological Association of the United Kingdom / Volume 97 / Issue 3 / May 2017
- Published online by Cambridge University Press:
- 14 September 2016, pp. 507-523
-
- Article
- Export citation
-
Within the COST action EMBOS (European Marine Biodiversity Observatory System) the degree and variation of the diversity and densities of soft-bottom communities from the lower intertidal or the shallow subtidal was measured at 28 marine sites along the European coastline (Baltic, Atlantic, Mediterranean) using jointly agreed and harmonized protocols, tools and indicators. The hypothesis tested was that the diversity for all taxonomic groups would decrease with increasing latitude. The EMBOS system delivered accurate and comparable data on the diversity and densities of the soft sediment macrozoobenthic community over a large-scale gradient along the European coastline. In contrast to general biogeographic theory, species diversity showed no linear relationship with latitude, yet a bell-shaped relation was found. The diversity and densities of benthos were mostly positively correlated with environmental factors such as temperature, salinity, mud and organic matter content in sediment, or wave height, and related with location characteristics such as system type (lagoons, estuaries, open coast) or stratum (intertidal, subtidal). For some relationships, a maximum (e.g. temperature from 15–20°C; mud content of sediment around 40%) or bimodal curve (e.g. salinity) was found. In lagoons the densities were twice higher than in other locations, and at open coasts the diversity was much lower than in other locations. We conclude that latitudinal trends and regional differences in diversity and densities are strongly influenced by, i.e. merely the result of, particular sets and ranges of environmental factors and location characteristics specific to certain areas, such as the Baltic, with typical salinity clines (favouring insects) and the Mediterranean, with higher temperatures (favouring crustaceans). Therefore, eventual trends with latitude are primarily indirect and so can be overcome by local variation of environmental factors.
Editorial: Promoting discussion on critical issues
- Rick Welsh, Charles Francis
-
- Journal:
- Renewable Agriculture and Food Systems / Volume 31 / Issue 1 / February 2016
- Published online by Cambridge University Press:
- 18 January 2016, p. 1
-
- Article
-
- You have access Access
- HTML
- Export citation
Detection of skewed X-chromosome inactivation in Fragile X syndrome and X chromosome aneuploidy using quantitative melt analysis
- David E. Godler, Yoshimi Inaba, Charles E. Schwartz, Quang M. Bui, Elva Z. Shi, Xin Li, Amy S. Herlihy, Cindy Skinner, Randi J. Hagerman, David Francis, David J. Amor, Sylvia A. Metcalfe, John L. Hopper, Howard R. Slater
-
- Journal:
- Expert Reviews in Molecular Medicine / Volume 17 / 2015
- Published online by Cambridge University Press:
- 01 July 2015, e13
-
- Article
-
- You have access Access
- Open access
- HTML
- Export citation
-
Methylation of the fragile X mental retardation 1 (FMR1) exon 1/intron 1 boundary positioned fragile X related epigenetic element 2 (FREE2), reveals skewed X-chromosome inactivation (XCI) in fragile X syndrome full mutation (FM: CGG > 200) females. XCI skewing has been also linked to abnormal X-linked gene expression with the broader clinical impact for sex chromosome aneuploidies (SCAs). In this study, 10 FREE2 CpG sites were targeted using methylation specific quantitative melt analysis (MS-QMA), including 3 sites that could not be analysed with previously used EpiTYPER system. The method was applied for detection of skewed XCI in FM females and in different types of SCA. We tested venous blood and saliva DNA collected from 107 controls (CGG < 40), and 148 FM and 90 SCA individuals. MS-QMA identified: (i) most SCAs if combined with a Y chromosome test; (ii) locus-specific XCI skewing towards the hypomethylated state in FM females; and (iii) skewed XCI towards the hypermethylated state in SCA with 3 or more X chromosomes, and in 5% of the 47,XXY individuals. MS-QMA output also showed significant correlation with the EpiTYPER reference method in FM males and females (P < 0.0001) and SCAs (P < 0.05). In conclusion, we demonstrate use of MS-QMA to quantify skewed XCI in two applications with diagnostic utility.
Contributors
-
- By Mitchell Aboulafia, Frederick Adams, Marilyn McCord Adams, Robert M. Adams, Laird Addis, James W. Allard, David Allison, William P. Alston, Karl Ameriks, C. Anthony Anderson, David Leech Anderson, Lanier Anderson, Roger Ariew, David Armstrong, Denis G. Arnold, E. J. Ashworth, Margaret Atherton, Robin Attfield, Bruce Aune, Edward Wilson Averill, Jody Azzouni, Kent Bach, Andrew Bailey, Lynne Rudder Baker, Thomas R. Baldwin, Jon Barwise, George Bealer, William Bechtel, Lawrence C. Becker, Mark A. Bedau, Ernst Behler, José A. Benardete, Ermanno Bencivenga, Jan Berg, Michael Bergmann, Robert L. Bernasconi, Sven Bernecker, Bernard Berofsky, Rod Bertolet, Charles J. Beyer, Christian Beyer, Joseph Bien, Joseph Bien, Peg Birmingham, Ivan Boh, James Bohman, Daniel Bonevac, Laurence BonJour, William J. Bouwsma, Raymond D. Bradley, Myles Brand, Richard B. Brandt, Michael E. Bratman, Stephen E. Braude, Daniel Breazeale, Angela Breitenbach, Jason Bridges, David O. Brink, Gordon G. Brittan, Justin Broackes, Dan W. Brock, Aaron Bronfman, Jeffrey E. Brower, Bartosz Brozek, Anthony Brueckner, Jeffrey Bub, Lara Buchak, Otavio Bueno, Ann E. Bumpus, Robert W. Burch, John Burgess, Arthur W. Burks, Panayot Butchvarov, Robert E. Butts, Marina Bykova, Patrick Byrne, David Carr, Noël Carroll, Edward S. Casey, Victor Caston, Victor Caston, Albert Casullo, Robert L. Causey, Alan K. L. Chan, Ruth Chang, Deen K. Chatterjee, Andrew Chignell, Roderick M. Chisholm, Kelly J. Clark, E. J. Coffman, Robin Collins, Brian P. Copenhaver, John Corcoran, John Cottingham, Roger Crisp, Frederick J. Crosson, Antonio S. Cua, Phillip D. Cummins, Martin Curd, Adam Cureton, Andrew Cutrofello, Stephen Darwall, Paul Sheldon Davies, Wayne A. Davis, Timothy Joseph Day, Claudio de Almeida, Mario De Caro, Mario De Caro, John Deigh, C. F. Delaney, Daniel C. Dennett, Michael R. DePaul, Michael Detlefsen, Daniel Trent Devereux, Philip E. Devine, John M. Dillon, Martin C. Dillon, Robert DiSalle, Mary Domski, Alan Donagan, Paul Draper, Fred Dretske, Mircea Dumitru, Wilhelm Dupré, Gerald Dworkin, John Earman, Ellery Eells, Catherine Z. Elgin, Berent Enç, Ronald P. Endicott, Edward Erwin, John Etchemendy, C. Stephen Evans, Susan L. Feagin, Solomon Feferman, Richard Feldman, Arthur Fine, Maurice A. Finocchiaro, William FitzPatrick, Richard E. Flathman, Gvozden Flego, Richard Foley, Graeme Forbes, Rainer Forst, Malcolm R. Forster, Daniel Fouke, Patrick Francken, Samuel Freeman, Elizabeth Fricker, Miranda Fricker, Michael Friedman, Michael Fuerstein, Richard A. Fumerton, Alan Gabbey, Pieranna Garavaso, Daniel Garber, Jorge L. A. Garcia, Robert K. Garcia, Don Garrett, Philip Gasper, Gerald Gaus, Berys Gaut, Bernard Gert, Roger F. Gibson, Cody Gilmore, Carl Ginet, Alan H. Goldman, Alvin I. Goldman, Alfonso Gömez-Lobo, Lenn E. Goodman, Robert M. Gordon, Stefan Gosepath, Jorge J. E. Gracia, Daniel W. Graham, George A. Graham, Peter J. Graham, Richard E. Grandy, I. Grattan-Guinness, John Greco, Philip T. Grier, Nicholas Griffin, Nicholas Griffin, David A. Griffiths, Paul J. Griffiths, Stephen R. Grimm, Charles L. Griswold, Charles B. Guignon, Pete A. Y. Gunter, Dimitri Gutas, Gary Gutting, Paul Guyer, Kwame Gyekye, Oscar A. Haac, Raul Hakli, Raul Hakli, Michael Hallett, Edward C. Halper, Jean Hampton, R. James Hankinson, K. R. Hanley, Russell Hardin, Robert M. Harnish, William Harper, David Harrah, Kevin Hart, Ali Hasan, William Hasker, John Haugeland, Roger Hausheer, William Heald, Peter Heath, Richard Heck, John F. Heil, Vincent F. Hendricks, Stephen Hetherington, Francis Heylighen, Kathleen Marie Higgins, Risto Hilpinen, Harold T. Hodes, Joshua Hoffman, Alan Holland, Robert L. Holmes, Richard Holton, Brad W. Hooker, Terence E. Horgan, Tamara Horowitz, Paul Horwich, Vittorio Hösle, Paul Hoβfeld, Daniel Howard-Snyder, Frances Howard-Snyder, Anne Hudson, Deal W. Hudson, Carl A. Huffman, David L. Hull, Patricia Huntington, Thomas Hurka, Paul Hurley, Rosalind Hursthouse, Guillermo Hurtado, Ronald E. Hustwit, Sarah Hutton, Jonathan Jenkins Ichikawa, Harry A. Ide, David Ingram, Philip J. Ivanhoe, Alfred L. Ivry, Frank Jackson, Dale Jacquette, Joseph Jedwab, Richard Jeffrey, David Alan Johnson, Edward Johnson, Mark D. Jordan, Richard Joyce, Hwa Yol Jung, Robert Hillary Kane, Tomis Kapitan, Jacquelyn Ann K. Kegley, James A. Keller, Ralph Kennedy, Sergei Khoruzhii, Jaegwon Kim, Yersu Kim, Nathan L. King, Patricia Kitcher, Peter D. Klein, E. D. Klemke, Virginia Klenk, George L. Kline, Christian Klotz, Simo Knuuttila, Joseph J. Kockelmans, Konstantin Kolenda, Sebastian Tomasz Kołodziejczyk, Isaac Kramnick, Richard Kraut, Fred Kroon, Manfred Kuehn, Steven T. Kuhn, Henry E. Kyburg, John Lachs, Jennifer Lackey, Stephen E. Lahey, Andrea Lavazza, Thomas H. Leahey, Joo Heung Lee, Keith Lehrer, Dorothy Leland, Noah M. Lemos, Ernest LePore, Sarah-Jane Leslie, Isaac Levi, Andrew Levine, Alan E. Lewis, Daniel E. Little, Shu-hsien Liu, Shu-hsien Liu, Alan K. L. Chan, Brian Loar, Lawrence B. Lombard, John Longeway, Dominic McIver Lopes, Michael J. Loux, E. J. Lowe, Steven Luper, Eugene C. Luschei, William G. Lycan, David Lyons, David Macarthur, Danielle Macbeth, Scott MacDonald, Jacob L. Mackey, Louis H. Mackey, Penelope Mackie, Edward H. Madden, Penelope Maddy, G. B. Madison, Bernd Magnus, Pekka Mäkelä, Rudolf A. Makkreel, David Manley, William E. Mann (W.E.M.), Vladimir Marchenkov, Peter Markie, Jean-Pierre Marquis, Ausonio Marras, Mike W. Martin, A. P. Martinich, William L. McBride, David McCabe, Storrs McCall, Hugh J. McCann, Robert N. McCauley, John J. McDermott, Sarah McGrath, Ralph McInerny, Daniel J. McKaughan, Thomas McKay, Michael McKinsey, Brian P. McLaughlin, Ernan McMullin, Anthonie Meijers, Jack W. Meiland, William Jason Melanson, Alfred R. Mele, Joseph R. Mendola, Christopher Menzel, Michael J. Meyer, Christian B. Miller, David W. Miller, Peter Millican, Robert N. Minor, Phillip Mitsis, James A. Montmarquet, Michael S. Moore, Tim Moore, Benjamin Morison, Donald R. Morrison, Stephen J. Morse, Paul K. Moser, Alexander P. D. Mourelatos, Ian Mueller, James Bernard Murphy, Mark C. Murphy, Steven Nadler, Jan Narveson, Alan Nelson, Jerome Neu, Samuel Newlands, Kai Nielsen, Ilkka Niiniluoto, Carlos G. Noreña, Calvin G. Normore, David Fate Norton, Nikolaj Nottelmann, Donald Nute, David S. Oderberg, Steve Odin, Michael O’Rourke, Willard G. Oxtoby, Heinz Paetzold, George S. Pappas, Anthony J. Parel, Lydia Patton, R. P. Peerenboom, Francis Jeffry Pelletier, Adriaan T. Peperzak, Derk Pereboom, Jaroslav Peregrin, Glen Pettigrove, Philip Pettit, Edmund L. Pincoffs, Andrew Pinsent, Robert B. Pippin, Alvin Plantinga, Louis P. Pojman, Richard H. Popkin, John F. Post, Carl J. Posy, William J. Prior, Richard Purtill, Michael Quante, Philip L. Quinn, Philip L. Quinn, Elizabeth S. Radcliffe, Diana Raffman, Gerard Raulet, Stephen L. Read, Andrews Reath, Andrew Reisner, Nicholas Rescher, Henry S. Richardson, Robert C. Richardson, Thomas Ricketts, Wayne D. Riggs, Mark Roberts, Robert C. Roberts, Luke Robinson, Alexander Rosenberg, Gary Rosenkranz, Bernice Glatzer Rosenthal, Adina L. Roskies, William L. Rowe, T. M. Rudavsky, Michael Ruse, Bruce Russell, Lilly-Marlene Russow, Dan Ryder, R. M. Sainsbury, Joseph Salerno, Nathan Salmon, Wesley C. Salmon, Constantine Sandis, David H. Sanford, Marco Santambrogio, David Sapire, Ruth A. Saunders, Geoffrey Sayre-McCord, Charles Sayward, James P. Scanlan, Richard Schacht, Tamar Schapiro, Frederick F. Schmitt, Jerome B. Schneewind, Calvin O. Schrag, Alan D. Schrift, George F. Schumm, Jean-Loup Seban, David N. Sedley, Kenneth Seeskin, Krister Segerberg, Charlene Haddock Seigfried, Dennis M. Senchuk, James F. Sennett, William Lad Sessions, Stewart Shapiro, Tommie Shelby, Donald W. Sherburne, Christopher Shields, Roger A. Shiner, Sydney Shoemaker, Robert K. Shope, Kwong-loi Shun, Wilfried Sieg, A. John Simmons, Robert L. Simon, Marcus G. Singer, Georgette Sinkler, Walter Sinnott-Armstrong, Matti T. Sintonen, Lawrence Sklar, Brian Skyrms, Robert C. Sleigh, Michael Anthony Slote, Hans Sluga, Barry Smith, Michael Smith, Robin Smith, Robert Sokolowski, Robert C. Solomon, Marta Soniewicka, Philip Soper, Ernest Sosa, Nicholas Southwood, Paul Vincent Spade, T. L. S. Sprigge, Eric O. Springsted, George J. Stack, Rebecca Stangl, Jason Stanley, Florian Steinberger, Sören Stenlund, Christopher Stephens, James P. Sterba, Josef Stern, Matthias Steup, M. A. Stewart, Leopold Stubenberg, Edith Dudley Sulla, Frederick Suppe, Jere Paul Surber, David George Sussman, Sigrún Svavarsdóttir, Zeno G. Swijtink, Richard Swinburne, Charles C. Taliaferro, Robert B. Talisse, John Tasioulas, Paul Teller, Larry S. Temkin, Mark Textor, H. S. Thayer, Peter Thielke, Alan Thomas, Amie L. Thomasson, Katherine Thomson-Jones, Joshua C. Thurow, Vzalerie Tiberius, Terrence N. Tice, Paul Tidman, Mark C. Timmons, William Tolhurst, James E. Tomberlin, Rosemarie Tong, Lawrence Torcello, Kelly Trogdon, J. D. Trout, Robert E. Tully, Raimo Tuomela, John Turri, Martin M. Tweedale, Thomas Uebel, Jennifer Uleman, James Van Cleve, Harry van der Linden, Peter van Inwagen, Bryan W. Van Norden, René van Woudenberg, Donald Phillip Verene, Samantha Vice, Thomas Vinci, Donald Wayne Viney, Barbara Von Eckardt, Peter B. M. Vranas, Steven J. Wagner, William J. Wainwright, Paul E. Walker, Robert E. Wall, Craig Walton, Douglas Walton, Eric Watkins, Richard A. Watson, Michael V. Wedin, Rudolph H. Weingartner, Paul Weirich, Paul J. Weithman, Carl Wellman, Howard Wettstein, Samuel C. Wheeler, Stephen A. White, Jennifer Whiting, Edward R. Wierenga, Michael Williams, Fred Wilson, W. Kent Wilson, Kenneth P. Winkler, John F. Wippel, Jan Woleński, Allan B. Wolter, Nicholas P. Wolterstorff, Rega Wood, W. Jay Wood, Paul Woodruff, Alison Wylie, Gideon Yaffe, Takashi Yagisawa, Yutaka Yamamoto, Keith E. Yandell, Xiaomei Yang, Dean Zimmerman, Günter Zoller, Catherine Zuckert, Michael Zuckert, Jack A. Zupko (J.A.Z.)
- Edited by Robert Audi, University of Notre Dame, Indiana
-
- Book:
- The Cambridge Dictionary of Philosophy
- Published online:
- 05 August 2015
- Print publication:
- 27 April 2015, pp ix-xxx
-
- Chapter
- Export citation
Television viewing and food intake during television viewing in normal-weight, overweight and obese 9- to 11-year-old Canadian children: a cross-sectional analysis
- Michael M. Borghese, Mark S. Tremblay, Genevieve Leduc, Charles Boyer, Priscilla Bélanger, Allana G. LeBlanc, Claire Francis, Jean-Philippe Chaput
-
- Journal:
- Journal of Nutritional Science / Volume 4 / 2015
- Published online by Cambridge University Press:
- 27 February 2015, e8
-
- Article
-
- You have access Access
- Open access
- HTML
- Export citation
-
It is unclear if children of different weight status differ in their nutritional habits while watching television. The objective of the present paper was to determine if children who are overweight or obese differ in their frequency of consumption of six food items while watching television compared with their normal-weight counterparts. A cross-sectional study of 550 children (57·1 % female; mean age = 10 years) from Ottawa, Canada was conducted. Children's weight status was categorised using the Centers for Disease Control and Prevention cut-points. Questionnaires were used to determine the number of hours of television watching per day and the frequency of consumption of six types of foods while watching television. Overweight/obese children watched more television per day than normal-weight children (3·3 v. 2·7 h, respectively; P = 0·001). Obese children consumed fast food and fruits/vegetables more frequently while watching television than normal-weight or overweight children (P < 0·05). Children who watched more than 4 h of television per d had higher odds (OR 3·21; 95% CI 1·14, 9·03; P = 0·03) of being obese, independent of several covariates, but not independent of moderate-to-vigorous physical activity. The finding that both television watching and the frequency of consumption of some food items during television watching are higher in children who are obese is concerning. While the nature of the present study does not allow for the determination of causal pathways, future research should investigate these weight-status differences to identify potential areas of intervention.
Are thermophilic microorganisms active in cold environments?
- Charles S. Cockell, Claire Cousins, Paul T. Wilkinson, Karen Olsson-Francis, Ben Rozitis
-
- Journal:
- International Journal of Astrobiology / Volume 14 / Issue 3 / July 2015
- Published online by Cambridge University Press:
- 10 November 2014, pp. 457-463
-
- Article
- Export citation
-
The mean air temperature of the Icelandic interior is below 10 °C. However, we have previously observed 16S rDNA sequences associated with thermophilic lineages in Icelandic basalts. Measurements of the temperatures of igneous rocks in Iceland showed that solar insolation of these low albedo substrates achieved a peak surface temperature of 44.5 °C. We isolated seven thermophilic Geobacillus species from basalt with optimal growth temperatures of ~65 °C. The minimum growth temperature of these organisms was ~36 °C, suggesting that they could be active in the rock environment. Basalt dissolution rates at 40 °C were increased in the presence of one of the isolates compared to abiotic controls, showing its potential to be involved in active biogeochemistry at environmental temperatures. These data raise the possibility of transient active thermophilic growth in macroclimatically cold rocky environments, implying that the biogeographical distribution of active thermophiles might be greater than previously understood. These data show that temperatures measured or predicted over large scales on a planet are not in themselves adequate to assess niches available to extremophiles at micron scales.